IL_5GAH_131

3D structure

PDB id

5GAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP with detached NG domain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

5GAH|1|A|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAH_131 not in the Motif Atlas

Homologous match to IL_9DFE_094

Geometric discrepancy: 0.1599

The information below is about IL_9DFE_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

5GAH|1|A|A|2459
5GAH|1|A|U|2460
5GAH|1|A|A|2461
*
5GAH|1|A|U|2489
5GAH|1|A|G|2490
5GAH|1|A|U|2491
5GAH|1|A|U|2492
5GAH|1|A|U|2493

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16