IL_5GAK_016

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

UUGA*UCAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAK_016 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2749

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

5GAK|1|1|U|413
5GAK|1|1|U|414
5GAK|1|1|G|415
5GAK|1|1|A|416
*
5GAK|1|4|U|7
5GAK|1|4|C|8
5GAK|1|4|A|9
5GAK|1|4|A|10

Current chains

Chain 1

25S rRNA

Chain 4

5.8S rRNA

Nearby chains

Chain R

60S ribosomal protein L17-A

Chain g

60S ribosomal protein L32