IL_5GAK_031

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

5GAK|1|1|G|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAK_031 not in the Motif Atlas

Geometric match to IL_4WF9_023

Geometric discrepancy: 0.1576

The information below is about IL_4WF9_023

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

5GAK|1|1|G|833
5GAK|1|1|U|834
*
5GAK|1|1|G|859
5GAK|1|1|G|860
5GAK|1|1|C|861

Current chains

Chain 1

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L43-A

Chain E

60S ribosomal protein L2-A

Chain T

60S ribosomal protein L19-A