IL_5GAK_044

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAK_044 not in the Motif Atlas

Geometric match to IL_5J7L_061

Geometric discrepancy: 0.1518

The information below is about IL_5J7L_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5GAK|1|1|A|1009
5GAK|1|1|G|1010
5GAK|1|1|A|1011
*
5GAK|1|1|U|1039
5GAK|1|1|A|1040
5GAK|1|1|U|1041

Current chains

Chain 1

25S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA

Chain H

60S ribosomal protein L5

Chain s

60S ribosomal protein L10