IL_5GAK_056

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

AUCUAGACAG*CCGAAU

Length

16 nucleotides

Bulged bases

5GAK|1|1|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAK|1|1|A|1217
5GAK|1|1|U|1218
5GAK|1|1|C|1219
5GAK|1|1|U|1220
5GAK|1|1|A|1221
5GAK|1|1|G|1222
5GAK|1|1|A|1223
5GAK|1|1|C|1224
5GAK|1|1|A|1225
5GAK|1|1|G|1226
*
5GAK|1|1|C|1283
5GAK|1|1|C|1284
5GAK|1|1|G|1285
5GAK|1|1|A|1286
5GAK|1|1|A|1287
5GAK|1|1|U|1288

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L9-A

Chain U

60S ribosomal protein L20-A

Chain o

Ubiquitin-60S ribosomal protein L40