3D structure

PDB id
5GAK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.88 Å

Loop

Sequence
GGAUU*AGUUUUC
Length
12 nucleotides
Bulged bases
5GAK|1|1|U|1820, 5GAK|1|1|U|1821
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5GAK|1|1|G|1623
5GAK|1|1|G|1624
5GAK|1|1|A|1625
5GAK|1|1|U|1626
5GAK|1|1|U|1627
*
5GAK|1|1|A|1816
5GAK|1|1|G|1817
5GAK|1|1|U|1818
5GAK|1|1|U|1819
5GAK|1|1|U|1820
5GAK|1|1|U|1821
5GAK|1|1|C|1822

Current chains

Chain 1
25S rRNA

Nearby chains

Chain b
60S ribosomal protein L27-A
Chain i
60S ribosomal protein L34-A
Chain m
60S ribosomal protein L38

Coloring options:

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