IL_5GAK_078

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

AGA*UCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AGA,UCU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAK_078 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.2318

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

5GAK|1|1|A|1881
5GAK|1|1|G|1882
5GAK|1|1|A|1883
*
5GAK|1|1|U|2349
5GAK|1|1|C|2350
5GAK|1|1|U|2351

Current chains

Chain 1

25S rRNA

Nearby chains

Chain R

60S ribosomal protein L17-A

Chain f

60S ribosomal protein L31-A