IL_5GAK_081

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAK_081 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.183

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

5GAK|1|1|G|1898
5GAK|1|1|G|1899
5GAK|1|1|A|1900
5GAK|1|1|A|1901
5GAK|1|1|G|1902
5GAK|1|1|U|1903
5GAK|1|1|C|1904
5GAK|1|1|G|1905
5GAK|1|1|G|1906
*
5GAK|1|1|C|2333
5GAK|1|1|U|2334
5GAK|1|1|G|2335
5GAK|1|1|U|2336
5GAK|1|1|C|2337

Current chains

Chain 1

25S rRNA

Nearby chains

Chain F

60S ribosomal protein L3

Chain X

60S ribosomal protein L23-A