IL_5GAK_091

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CUGAAUG*CGCG

Length

11 nucleotides

Bulged bases

5GAK|1|1|U|2205, 5GAK|1|1|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAK|1|1|C|2204
5GAK|1|1|U|2205
5GAK|1|1|G|2206
5GAK|1|1|A|2207
5GAK|1|1|A|2208
5GAK|1|1|U|2209
5GAK|1|1|G|2210
*
5GAK|1|1|C|2235
5GAK|1|1|G|2236
5GAK|1|1|C|2237
5GAK|1|1|G|2238

Current chains

Chain 1

25S rRNA

Nearby chains

Chain E

60S ribosomal protein L2-A

Chain q

Eukaryotic translation initiation factor 5A-1

Chain r

ribosomal protein RPL1