IL_5GAK_096

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

5GAK|1|1|A|2397, 5GAK|1|1|C|2983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAK_096 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.1895

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5GAK|1|1|G|2396
5GAK|1|1|A|2397
5GAK|1|1|A|2398
*
5GAK|1|1|U|2981
5GAK|1|1|A|2982
5GAK|1|1|C|2983
5GAK|1|1|C|2984

Current chains

Chain 1

25S rRNA

Nearby chains

Chain F

60S ribosomal protein L3

Chain R

60S ribosomal protein L17-A