IL_5GAK_099
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- CUAG*UGGGG
- Length
- 9 nucleotides
- Bulged bases
- 5GAK|1|1|G|2606
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GAK_099 not in the Motif Atlas
- Geometric match to IL_5BTP_004
- Geometric discrepancy: 0.3573
- The information below is about IL_5BTP_004
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
5GAK|1|1|C|2422
5GAK|1|1|U|2423
5GAK|1|1|A|2424
5GAK|1|1|G|2425
*
5GAK|1|1|U|2604
5GAK|1|1|G|2605
5GAK|1|1|G|2606
5GAK|1|1|G|2607
5GAK|1|1|G|2608
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L42-A
- Chain E
- 60S ribosomal protein L2-A
- Chain P
- 60S ribosomal protein L15-A
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