IL_5GAK_118

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GUC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUC,GAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAK_118 not in the Motif Atlas

Geometric match to IL_5Y7M_007

Geometric discrepancy: 0.1716

The information below is about IL_5Y7M_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5GAK|1|1|G|2961
5GAK|1|1|U|2962
5GAK|1|1|C|2963
*
5GAK|1|1|G|2968
5GAK|1|1|A|2969
5GAK|1|1|C|2970

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain E

60S ribosomal protein L2-A

Chain q

Eukaryotic translation initiation factor 5A-1