3D structure

PDB id
5GAK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.88 Å

Loop

Sequence
GAU*AC
Length
5 nucleotides
Bulged bases
5GAK|1|1|A|3178
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5GAK_128 not in the Motif Atlas
Homologous match to IL_5TBW_123
Geometric discrepancy: 0.2572
The information below is about IL_5TBW_123
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

5GAK|1|1|G|3177
5GAK|1|1|A|3178
5GAK|1|1|U|3179
*
5GAK|1|1|A|3210
5GAK|1|1|C|3211

Current chains

Chain 1
25S rRNA

Nearby chains

Chain I
60S ribosomal protein L6-A
Chain O
60S ribosomal protein L14-B
Chain Q
60S ribosomal protein L16-A
Chain U
60S ribosomal protein L20-A
Chain h
60S ribosomal protein L33-A

Coloring options:


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