IL_5GAK_128
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- GAU*AC
- Length
- 5 nucleotides
- Bulged bases
- 5GAK|1|1|A|3178
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GAK_128 not in the Motif Atlas
- Homologous match to IL_5TBW_123
- Geometric discrepancy: 0.2572
- The information below is about IL_5TBW_123
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
5GAK|1|1|G|3177
5GAK|1|1|A|3178
5GAK|1|1|U|3179
*
5GAK|1|1|A|3210
5GAK|1|1|C|3211
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L6-A
- Chain O
- 60S ribosomal protein L14-B
- Chain Q
- 60S ribosomal protein L16-A
- Chain U
- 60S ribosomal protein L20-A
- Chain h
- 60S ribosomal protein L33-A
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