IL_5GAK_135

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CG*UUG

Length

5 nucleotides

Bulged bases

5GAK|1|1|U|3382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAK_135 not in the Motif Atlas

Homologous match to IL_5TBW_131

Geometric discrepancy: 0.373

The information below is about IL_5TBW_131

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5GAK|1|1|C|3324
5GAK|1|1|G|3325
*
5GAK|1|1|U|3381
5GAK|1|1|U|3382
5GAK|1|1|G|3383

Current chains

Chain 1

25S rRNA

Nearby chains

Chain F

60S ribosomal protein L3

Chain f

60S ribosomal protein L31-A