IL_5GAK_138

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

5GAK|1|1|U|3341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAK_138 not in the Motif Atlas

Geometric match to IL_3TZR_002

Geometric discrepancy: 0.2527

The information below is about IL_3TZR_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5GAK|1|1|G|3340
5GAK|1|1|U|3341
5GAK|1|1|A|3342
*
5GAK|1|1|U|3363
5GAK|1|1|C|3364

Current chains

Chain 1

25S rRNA

Nearby chains

Chain Y

60S ribosomal protein L24-A