IL_5GAK_151

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CAGG*CCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAGG,CCUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAK_151 not in the Motif Atlas

Homologous match to IL_3AMU_001

Geometric discrepancy: 0.3075

The information below is about IL_3AMU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAK|1|A|C|50
5GAK|1|A|A|51
5GAK|1|A|G|52
5GAK|1|A|G|53
*
5GAK|1|A|C|61
5GAK|1|A|C|62
5GAK|1|A|U|63
5GAK|1|A|G|64

Current chains

Chain A

The A-site tRNA was modeled based on an E. coli tRNA-Lys

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain s

60S ribosomal protein L10