IL_5GAK_173
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- CCUC*GAGCG
- Length
- 9 nucleotides
- Bulged bases
- 5GAK|1|4|C|151
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GAK_173 not in the Motif Atlas
- Geometric match to IL_4K27_001
- Geometric discrepancy: 0.3166
- The information below is about IL_4K27_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
5GAK|1|1|C|7
5GAK|1|1|C|8
5GAK|1|1|U|9
5GAK|1|1|C|10
*
5GAK|1|4|G|148
5GAK|1|4|A|149
5GAK|1|4|G|150
5GAK|1|4|C|151
5GAK|1|4|G|152
Current chains
- Chain 1
- 25S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain K
- 60S ribosomal protein L8-A
- Chain P
- 60S ribosomal protein L15-A
- Chain Z
- 60S ribosomal protein L25
Coloring options: