IL_5GAN_010

3D structure

PDB id

5GAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 Angstrom

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUC*GGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAN_010 not in the Motif Atlas

Geometric match to IL_4V88_405

Geometric discrepancy: 0.1195

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

5GAN|1|W|U|2
5GAN|1|W|U|3
5GAN|1|W|C|4
*
5GAN|1|W|G|22
5GAN|1|W|G|23
5GAN|1|W|A|24

Current chains

Chain W

U6 snRNA

Nearby chains

Chain A

Pre-mRNA-splicing factor 8