IL_5GIN_001
3D structure
- PDB id
- 5GIN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of box C/D RNP with 12 nt guide regions and 9 nt substrates
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.31 Å
Loop
- Sequence
- UUGUGAUG*CUGAA
- Length
- 13 nucleotides
- Bulged bases
- 5GIN|1|G|U|11
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GIN_001 not in the Motif Atlas
- Geometric match to IL_3PLA_001
- Geometric discrepancy: 0.0649
- The information below is about IL_3PLA_001
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_69229.2
- Basepair signature
- cWW-tHS-tSH-tSS-cWW-cWW-cWW-L
- Number of instances in this motif group
- 11
Unit IDs
5GIN|1|G|U|8
5GIN|1|G|U|9
5GIN|1|G|G|10
5GIN|1|G|U|11
5GIN|1|G|G|12
5GIN|1|G|A|13
5GIN|1|G|U|14
5GIN|1|G|G|15
*
5GIN|1|H|C|29
5GIN|1|H|U|30
5GIN|1|H|G|31
5GIN|1|H|A|32
5GIN|1|H|A|33
Current chains
- Chain G
- C/D RNA
- Chain H
- C/D RNA
Nearby chains
- Chain B
- C/D box methylation guide ribonucleoprotein complex aNOP56 subunit
- Chain D
- 50S ribosomal protein L7Ae
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