IL_5GIN_003
3D structure
- PDB id
- 5GIN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of box C/D RNP with 12 nt guide regions and 9 nt substrates
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.31 Å
Loop
- Sequence
- CUGAA*UUGUGAUG
- Length
- 13 nucleotides
- Bulged bases
- 5GIN|1|N|U|11||||7_645
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GIN_003 not in the Motif Atlas
- Geometric match to IL_5GIP_001
- Geometric discrepancy: 0.1394
- The information below is about IL_5GIP_001
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_69229.5
- Basepair signature
- cWW-tSS-tSH-L-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5GIN|1|N|C|29
5GIN|1|N|U|30
5GIN|1|N|G|31
5GIN|1|N|A|32
5GIN|1|N|A|33
*
5GIN|1|N|U|8||||7_645
5GIN|1|N|U|9||||7_645
5GIN|1|N|G|10||||7_645
5GIN|1|N|U|11||||7_645
5GIN|1|N|G|12||||7_645
5GIN|1|N|A|13||||7_645
5GIN|1|N|U|14||||7_645
5GIN|1|N|G|15||||7_645
Current chains
- Chain N
- C/D RNA
Nearby chains
- Chain K
- C/D box methylation guide ribonucleoprotein complex aNOP56 subunit
- Chain L
- 50S ribosomal protein L7Ae
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