IL_5GM6_008

3D structure

PDB id

5GM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UG*CUA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GM6_008 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.2613

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

5GM6|1|L|U|42
5GM6|1|L|G|43
*
5GM6|1|M|C|491
5GM6|1|M|U|492
5GM6|1|M|A|493

Current chains

Chain L

U2 snRNA

Chain M

Pre-mRNA

Nearby chains

Chain G

U2 snRNP component HSH155

Chain I

Pre-mRNA-splicing factor PRP11