IL_5GMK_005
3D structure
- PDB id
- 5GMK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CC*GAUG
- Length
- 6 nucleotides
- Bulged bases
- 5GMK|1|E|A|79, 5GMK|1|E|U|80
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GMK_005 not in the Motif Atlas
- Geometric match to IL_4WF9_096
- Geometric discrepancy: 0.1047
- The information below is about IL_4WF9_096
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44609.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 24
Unit IDs
5GMK|1|E|C|67
5GMK|1|E|C|68
*
5GMK|1|E|G|78
5GMK|1|E|A|79
5GMK|1|E|U|80
5GMK|1|E|G|81
Current chains
- Chain E
- U6 snRNA
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain B
- 5'-Exon
- Chain L
- U2 splicesomal small nuclear RNA; U2 snRNA
- Chain M
- Intron_BPS
- Chain N
- 5'-Splicing Site
- Chain P
- Pre-mRNA-processing protein 45
- Chain Q
- Pre-mRNA-splicing factor SLT11
- Chain S
- Pre-mRNA-splicing factor CWC15
- Chain c
- Pre-mRNA-splicing factor CEF1
- Chain d
- Pre-mRNA-splicing factor CLF1
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