IL_5GMK_006
3D structure
- PDB id
- 5GMK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GU*AAC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GMK_006 not in the Motif Atlas
- Geometric match to IL_5WLH_001
- Geometric discrepancy: 0.2769
- The information below is about IL_5WLH_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_71421.3
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
5GMK|1|L|G|34
5GMK|1|L|U|35
*
5GMK|1|M|A|500
5GMK|1|M|A|501
5GMK|1|M|C|502
Current chains
- Chain L
- U2 snRNA
- Chain M
- Intron_BPS
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain B
- 5'-Exon
- Chain D
- U5 spliceosomal RNA; U5 snRNA
- Chain E
- U6 spliceosomal RNA; U6 snRNA
- Chain F
- Protein CWC16
- Chain G
- Pre-mRNA-splicing factor CWC25
- Chain H
- Pre-mRNA-splicing factor ISY1
- Chain N
- 5'-Splicing Site
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