IL_5H1K_001

3D structure

PDB id

5H1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of WD40 repeat domains of Gemin5 in complex with 13-nt U4 snRNA fragment

Experimental method

X-RAY DIFFRACTION

Resolution

1.9 Å

Loop

Sequence

GAC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

5H1K|1|C|G|7
5H1K|1|C|A|8
5H1K|1|C|C|9
*
5H1K|1|D|G|7
5H1K|1|D|A|8
5H1K|1|D|C|9

Current chains

Chain C

U4 snRNA (5'-R(*GP*CP*AP*AP*UP*UP*UP*UP*UP*GP*AP*CP*A)-3')

Chain D

U4 snRNA (5'-R(*GP*CP*AP*AP*UP*UP*UP*UP*UP*GP*AP*CP*A)-3')

Nearby chains

Chain A

Gem-associated protein 5

Chain B

Gem-associated protein 5