IL_5H4P_061

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

5H4P|1|1|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H4P_061 not in the Motif Atlas

Homologous match to IL_5TBW_071

Geometric discrepancy: 0.0976

The information below is about IL_5TBW_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

5H4P|1|1|U|1694
5H4P|1|1|U|1695
5H4P|1|1|A|1696
5H4P|1|1|A|1697
5H4P|1|1|C|1698
*
5H4P|1|1|G|1747
5H4P|1|1|G|1748
5H4P|1|1|A|1749
5H4P|1|1|A|1750
5H4P|1|1|G|1751
5H4P|1|1|A|1752

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain g

60S ribosomal protein L34-A

Chain k

60S ribosomal protein L38