IL_5H4P_068

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

5H4P|1|1|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H4P_068 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.1032

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5H4P|1|1|C|1918
5H4P|1|1|G|1919
5H4P|1|1|U|1920
5H4P|1|1|A|1921
5H4P|1|1|A|1922
5H4P|1|1|C|1923
*
5H4P|1|1|G|1928
5H4P|1|1|G|1929
5H4P|1|1|A|1930
5H4P|1|1|U|1931
5H4P|1|1|A|1932
5H4P|1|1|A|1933
5H4P|1|1|G|1934

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain p

60S ribosomal protein L43-A