IL_5H4P_072
3D structure
- PDB id
- 5H4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 5H4P|1|1|U|2159, 5H4P|1|1|U|2175, 5H4P|1|1|C|2179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5H4P_072 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.0914
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5H4P|1|1|C|2156
5H4P|1|1|G|2157
5H4P|1|1|A|2158
5H4P|1|1|U|2159
5H4P|1|1|G|2160
5H4P|1|1|G|2161
*
5H4P|1|1|U|2173
5H4P|1|1|G|2174
5H4P|1|1|U|2175
5H4P|1|1|U|2176
5H4P|1|1|G|2177
5H4P|1|1|A|2178
5H4P|1|1|C|2179
5H4P|1|1|G|2180
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain p
- 60S ribosomal protein L43-A
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