IL_5H4P_099

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

5H4P|1|1|A|3142, 5H4P|1|1|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H4P_099 not in the Motif Atlas

Homologous match to IL_5TBW_114

Geometric discrepancy: 0.0939

The information below is about IL_5TBW_114

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

5H4P|1|1|C|3004
5H4P|1|1|A|3005
5H4P|1|1|A|3006
5H4P|1|1|U|3007
*
5H4P|1|1|A|3139
5H4P|1|1|G|3140
5H4P|1|1|A|3141
5H4P|1|1|A|3142
5H4P|1|1|C|3143
5H4P|1|1|G|3144

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L16-A