IL_5H4P_103

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

5H4P|1|1|U|3056, 5H4P|1|1|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H4P_103 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.118

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

5H4P|1|1|U|3054
5H4P|1|1|U|3055
5H4P|1|1|U|3056
5H4P|1|1|U|3057
5H4P|1|1|U|3058
5H4P|1|1|G|3059
*
5H4P|1|1|C|3084
5H4P|1|1|G|3085
5H4P|1|1|A|3086
5H4P|1|1|A|3087
5H4P|1|1|G|3088

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain W

60S ribosomal protein L24-A

Chain d

60S ribosomal protein L31-A