IL_5H4P_106

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CACAC*GCGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H4P_106 not in the Motif Atlas

Homologous match to IL_5TBW_121

Geometric discrepancy: 0.2769

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5H4P|1|1|C|3162
5H4P|1|1|A|3163
5H4P|1|1|C|3164
5H4P|1|1|A|3165
5H4P|1|1|C|3166
*
5H4P|1|1|G|3284
5H4P|1|1|C|3285
5H4P|1|1|G|3286
5H4P|1|1|U|3287
5H4P|1|1|G|3288

Current chains

Chain 1

25S ribosomal RNA

Nearby chains