IL_5H4P_125
3D structure
- PDB id
- 5H4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GACCGAGUAG*CGAAACUC
- Length
- 18 nucleotides
- Bulged bases
- 5H4P|1|3|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5H4P_125 not in the Motif Atlas
- Geometric match to IL_3DIL_003
- Geometric discrepancy: 0.2732
- The information below is about IL_3DIL_003
- Detailed Annotation
- 9x8 Sarcin-Ricin with GA cWW pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_34470.3
- Basepair signature
- cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5H4P|1|3|G|71
5H4P|1|3|A|72
5H4P|1|3|C|73
5H4P|1|3|C|74
5H4P|1|3|G|75
5H4P|1|3|A|76
5H4P|1|3|G|77
5H4P|1|3|U|78
5H4P|1|3|A|79
5H4P|1|3|G|80
*
5H4P|1|3|C|100
5H4P|1|3|G|101
5H4P|1|3|A|102
5H4P|1|3|A|103
5H4P|1|3|A|104
5H4P|1|3|C|105
5H4P|1|3|U|106
5H4P|1|3|C|107
Current chains
- Chain 3
- 5S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 60S ribosomal protein L7-A
- Chain S
- 60S ribosomal protein L20-A
Coloring options: