IL_5H4P_137
3D structure
- PDB id
- 5H4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GUUAAG*CUAUAC
- Length
- 12 nucleotides
- Bulged bases
- 5H4P|1|1|U|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5H4P_137 not in the Motif Atlas
- Geometric match to IL_4WF9_104
- Geometric discrepancy: 0.2068
- The information below is about IL_4WF9_104
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
5H4P|1|1|G|1166
5H4P|1|1|U|1167
5H4P|1|1|U|1168
5H4P|1|1|A|1169
5H4P|1|1|A|1170
5H4P|1|1|G|1171
*
5H4P|1|1|C|1328
5H4P|1|1|U|1329
5H4P|1|1|A|1330
5H4P|1|1|U|1331
5H4P|1|1|A|1332
5H4P|1|1|C|1333
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 60S ribosomal protein L7-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain e
- 60S ribosomal protein L32
- Chain f
- 60S ribosomal protein L33-A
Coloring options: