IL_5H5U_039
3D structure
- PDB id
- 5H5U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanistic insights into the alternative translation termination by ArfA and RF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- GAAG*CGGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5H5U_039 not in the Motif Atlas
- Homologous match to IL_5J7L_283
- Geometric discrepancy: 0.1004
- The information below is about IL_5J7L_283
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
5H5U|1|A|G|1038
5H5U|1|A|A|1039
5H5U|1|A|A|1040
5H5U|1|A|G|1041
*
5H5U|1|A|C|1114
5H5U|1|A|G|1115
5H5U|1|A|G|1116
5H5U|1|A|C|1117
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain G
- 50S ribosomal protein L6
- Chain N
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L25
- Chain f
- 50S ribosomal protein L36
Coloring options: