IL_5H5U_097

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

5H5U|1|A|G|2576, 5H5U|1|A|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_097 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.0564

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5H5U|1|A|C|2510
5H5U|1|A|U|2511
5H5U|1|A|C|2512
*
5H5U|1|A|G|2574
5H5U|1|A|C|2575
5H5U|1|A|G|2576
5H5U|1|A|A|2577
5H5U|1|A|G|2578

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

Peptide chain release factor 2

Chain D

50S ribosomal protein L3

Chain b

50S ribosomal protein L32