IL_5H5U_128

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5H5U|1|h|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_128 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1208

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5H5U|1|h|G|147
5H5U|1|h|G|148
5H5U|1|h|A|149
5H5U|1|h|U|150
5H5U|1|h|A|151
5H5U|1|h|A|152
5H5U|1|h|C|153
*
5H5U|1|h|G|168
5H5U|1|h|C|169
5H5U|1|h|U|170
5H5U|1|h|A|171
5H5U|1|h|A|172
5H5U|1|h|U|173
5H5U|1|h|A|174
5H5U|1|h|C|175

Current chains

Chain h

16S rRNA

Nearby chains

Chain 1

30S ribosomal protein S20