IL_5H5U_130

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

5H5U|1|h|U|244, 5H5U|1|h|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_130 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.0935

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

5H5U|1|h|G|242
5H5U|1|h|A|243
5H5U|1|h|U|244
5H5U|1|h|U|245
5H5U|1|h|A|246
5H5U|1|h|G|247
*
5H5U|1|h|C|277
5H5U|1|h|G|278
5H5U|1|h|A|279
5H5U|1|h|C|280
5H5U|1|h|G|281
5H5U|1|h|A|282
5H5U|1|h|U|283
5H5U|1|h|C|284

Current chains

Chain h

16S rRNA

Nearby chains

Chain s

30S ribosomal protein S12

Chain x

30S ribosomal protein S17