IL_5H5U_142

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

5H5U|1|h|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_142 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.0751

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

5H5U|1|h|C|569
5H5U|1|h|G|570
5H5U|1|h|U|571
5H5U|1|h|A|572
5H5U|1|h|A|573
5H5U|1|h|A|574
5H5U|1|h|G|575
*
5H5U|1|h|C|880
5H5U|1|h|G|881

Current chains

Chain h

16S rRNA

Nearby chains

Chain s

30S ribosomal protein S12

Chain x

30S ribosomal protein S17