IL_5H5U_150
3D structure
- PDB id
- 5H5U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanistic insights into the alternative translation termination by ArfA and RF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- AGAAUU*AGGAAU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5H5U_150 not in the Motif Atlas
- Geometric match to IL_4LFB_030
- Geometric discrepancy: 0.0613
- The information below is about IL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
5H5U|1|h|A|673
5H5U|1|h|G|674
5H5U|1|h|A|675
5H5U|1|h|A|676
5H5U|1|h|U|677
5H5U|1|h|U|678
*
5H5U|1|h|A|712
5H5U|1|h|G|713
5H5U|1|h|G|714
5H5U|1|h|A|715
5H5U|1|h|A|716
5H5U|1|h|U|717
Current chains
- Chain h
- 16S rRNA
Nearby chains
- Chain 2
- 30S ribosomal protein S21
- Chain C
- 50S ribosomal protein L2
- Chain m
- 30S ribosomal protein S6
- Chain r
- 30S ribosomal protein S11
- Chain y
- 30S ribosomal protein S18
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