IL_5H5U_154

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_154 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0655

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

5H5U|1|h|G|887
5H5U|1|h|G|888
5H5U|1|h|A|889
5H5U|1|h|G|890
5H5U|1|h|U|891
5H5U|1|h|A|892
5H5U|1|h|C|893
5H5U|1|h|G|894
*
5H5U|1|h|U|905
5H5U|1|h|A|906
5H5U|1|h|A|907
5H5U|1|h|A|908
5H5U|1|h|A|909
5H5U|1|h|C|910

Current chains

Chain h

16S rRNA

Nearby chains

Chain s

30S ribosomal protein S12