IL_5H5U_157

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

5H5U|1|h|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_157 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.136

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5H5U|1|h|G|933
5H5U|1|h|C|934
5H5U|1|h|A|935
*
5H5U|1|h|U|1380
5H5U|1|h|U|1381
5H5U|1|h|C|1382
5H5U|1|h|C|1383
5H5U|1|h|C|1384

Current chains

Chain h

16S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain n

30S ribosomal protein S7

Chain p

30S ribosomal protein S9