IL_5H5U_167

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_167 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.0909

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

5H5U|1|h|G|1124
5H5U|1|h|U|1125
5H5U|1|h|U|1126
5H5U|1|h|G|1127
5H5U|1|h|C|1128
*
5H5U|1|h|G|1144
5H5U|1|h|A|1145
5H5U|1|h|A|1146
5H5U|1|h|C|1147
5H5U|1|h|U|1148
5H5U|1|h|C|1149

Current chains

Chain h

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S9

Chain q

30S ribosomal protein S10