IL_5H5U_177
3D structure
- PDB id
- 5H5U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanistic insights into the alternative translation termination by ArfA and RF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- CAC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- 5H5U|1|h|A|1493
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5H5U_177 not in the Motif Atlas
- Geometric match to IL_3C3Z_002
- Geometric discrepancy: 0.3003
- The information below is about IL_3C3Z_002
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_31737.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
5H5U|1|h|C|1407
5H5U|1|h|A|1408
5H5U|1|h|C|1409
*
5H5U|1|h|G|1491
5H5U|1|h|A|1492
5H5U|1|h|A|1493
5H5U|1|h|G|1494
Current chains
- Chain h
- 16S rRNA
Nearby chains
- Chain 3
- Alternative ribosome-rescue factor A
- Chain 4
- Peptide chain release factor 2
- Chain 7
- mRNA
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain s
- 30S ribosomal protein S12
Coloring options: