IL_5H5U_191

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_191 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0791

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5H5U|1|A|U|1851
5H5U|1|A|U|1852
5H5U|1|A|A|1853
5H5U|1|A|A|1854
5H5U|1|A|U|1855
5H5U|1|A|U|1856
5H5U|1|A|G|1857
5H5U|1|A|A|1858
5H5U|1|A|U|1859
5H5U|1|A|G|1860
*
5H5U|1|A|U|1882
5H5U|1|A|U|1883
5H5U|1|A|G|1884
5H5U|1|A|A|1885
5H5U|1|A|U|1886
5H5U|1|A|C|1887
5H5U|1|A|G|1888
5H5U|1|A|A|1889
5H5U|1|A|A|1890
5H5U|1|A|G|1891

Current chains

Chain A

23S rRNA

Nearby chains