IL_5HAU_034

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

5HAU|1|1A|C|1040

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HAU_034 not in the Motif Atlas

Homologous match to IL_7RQB_035

Geometric discrepancy: 0.0663

The information below is about IL_7RQB_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

5HAU|1|1A|C|1039
5HAU|1|1A|C|1040
5HAU|1|1A|A|1041
*
5HAU|1|1A|U|1204
5HAU|1|1A|G|1205

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L30

Chain 1L

50S ribosomal protein L13

Chain 1S

50S ribosomal protein L20

Chain 1T

50S ribosomal protein L21