IL_5HAU_086

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HAU_086 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3675

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

5HAU|1|1A|G|2145
5HAU|1|1A|G|2146
5HAU|1|1A|A|2147
5HAU|1|1A|G|2148
*
5HAU|1|1A|C|2182
5HAU|1|1A|G|2183
5HAU|1|1A|C|2184
5HAU|1|1A|C|2185
5HAU|1|1A|G|2186
5HAU|1|1A|G|2187
5HAU|1|1A|U|2188
5HAU|1|1A|G|2189
5HAU|1|1A|A|2190
5HAU|1|1A|A|2191
5HAU|1|1A|A|2192
5HAU|1|1A|U|2193
5HAU|1|1A|A|2194
5HAU|1|1A|C|2195

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1C

50S ribosomal protein L1