IL_5HAU_137

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HAU_137 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.076

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5HAU|1|1a|G|445
5HAU|1|1a|A|446
5HAU|1|1a|A|447
5HAU|1|1a|A|448
5HAU|1|1a|C|449
5HAU|1|1a|C|450
*
5HAU|1|1a|G|462
5HAU|1|1a|A|463
5HAU|1|1a|C|464
5HAU|1|1a|U|465
5HAU|1|1a|G|466
5HAU|1|1a|A|467
5HAU|1|1a|C|468

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1p

30S ribosomal protein S16