3D structure

PDB id
5HAU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UGAAAGAC*GGGGAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5HAU_144 not in the Motif Atlas
Homologous match to IL_4LFB_026
Geometric discrepancy: 0.2521
The information below is about IL_4LFB_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

5HAU|1|1a|U|589
5HAU|1|1a|G|590
5HAU|1|1a|A|591
5HAU|1|1a|A|592
5HAU|1|1a|A|593
5HAU|1|1a|G|594
5HAU|1|1a|A|595
5HAU|1|1a|C|596
*
5HAU|1|1a|G|612
5HAU|1|1a|G|613
5HAU|1|1a|G|614
5HAU|1|1a|G|615
5HAU|1|1a|A|616
5HAU|1|1a|G|617

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1d
30S ribosomal protein S4
Chain 1h
30S ribosomal protein S8
Chain 1p
30S ribosomal protein S16

Coloring options:


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