IL_5HAU_170

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

5HAU|1|1a|C|1383, 5HAU|1|1a|A|1481

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HAU_170 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.0575

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5HAU|1|1a|C|1382
5HAU|1|1a|C|1383
5HAU|1|1a|G|1384
*
5HAU|1|1a|C|1479
5HAU|1|1a|A|1480
5HAU|1|1a|A|1481
5HAU|1|1a|G|1482

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1w

Transfer RNA; tRNA

Chain 1y

mRNA

Chain 1z

Chimera protein of 50S ribosomal protein L9 and Elongation factor G