IL_5HAU_171
3D structure
- PDB id
- 5HAU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HAU_171 not in the Motif Atlas
- Geometric match to IL_4V88_464
- Geometric discrepancy: 0.0929
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5HAU|1|1a|G|1384
5HAU|1|1a|C|1385
5HAU|1|1a|C|1386
5HAU|1|1a|C|1387
*
5HAU|1|1a|G|1475
5HAU|1|1a|U|1476
5HAU|1|1a|A|1477
5HAU|1|1a|A|1478
5HAU|1|1a|C|1479
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1w
- Transfer RNA; tRNA
- Chain 1y
- mRNA
- Chain 1z
- Chimera protein of 50S ribosomal protein L9 and Elongation factor G
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