IL_5HAU_220

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

5HAU|1|2A|U|1106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HAU_220 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.257

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

5HAU|1|2A|G|1104
5HAU|1|2A|U|1105
5HAU|1|2A|U|1106
5HAU|1|2A|G|1107
*
5HAU|1|2A|C|1121
5HAU|1|2A|A|1122
5HAU|1|2A|U|1123
5HAU|1|2A|C|1124

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2K

50S ribosomal protein L11

Chain 2O

50S ribosomal protein L16

Chain 2X

50S ribosomal protein L25